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Indonesia Cruises

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Luxury Cruises to Indonesia

With over 17,000 islands that cover nearly 750,000 square miles of land and sea, Indonesia is  one of the largest countries in the world. It’s also one of the most ancient and culturally rich places on earth, with a deep history of spice trading, European influence, and intertwining religious backgrounds.

On Indonesia cruises, you’ll uncover this country’s wild, elemental natural beauty, from volcanoes and jungles in Celukan Bawang to secluded surf spots in Lombok. Get your adrenaline going on a jet ski tour around the beaches of Benoa, or try fresh vegetable curries as you sip on cool coconut milk after a yoga class in Ubud. You’ll experience the best of Bali, Lombok, and their surrounding islands on a luxury cruise to Indonesia with Celebrity.

Indonesia Cruise Highlights

Blissful bali.

Cruises to Indonesia will bring you to the world-famous island of Bali, where a boho vibe, exciting cuisine, and unspoiled beaches await. Bask in the sun on the bright white sands of Gunung Payung Beach, or head to artsy Ubud for an afternoon of yoga or a traditional dance class to rejuvenate your spirits. Relax with a fresh acai bowl or tropical blended cocktail as you overlook the palm-fringed sands of Nusa Dua and soak in this magical island’s blissful energy before heading back to the ship.

Endless Natural Beauty

Indonesia is full of natural beauty, unique biospheres, and some of the most sought-after beaches on earth. On cruises to Indonesia you’ll have the opportunity to trek to volcanic crater lakes, ride scenic boats through mangroves, surf and snorkel at tucked away jungle beaches, and much more. From casual birdwatching to adrenaline-boosting ATV safari tours, you’ll find endless opportunities to explore the natural world on a cruise to Indonesia.

Cross-Cultural Experiences

Indonesia is a country of contrasts in every way, and one of the biggest highlights of visiting is experiencing an array of harmonious, intertwining local cultures. Each port has its own traditions when it comes to food, art, architecture, dialect, and religion. This diverse cultural blend allows you to immerse yourself in a world of temples, shrines, ancient healing practices, local art, and island cuisine. Discover new perspectives, make everlasting memories, and gain a fresh understanding of how harmonious and welcoming this diverse island culture can be.

Indonesia Cruise Ports

Celukan bawang.

Celukan Bawang lies on the northern coast of Bali, fringed by dense tropical jungles to the south and the beautiful Bali sea to the north. Here you’ll enjoy the quieter, less developed side of the island. Visit Segara Karang Rata, a coastal wildlife preserve that hugs the sea, or Lovina Beach, where you may spot dolphins. Journey out to a tropical plantation to try the famous Kopi Luwak, an unusual and prized coffee. Step into the Brahmavihara-Arama Buddhist Temple, Bali’s largest Buddhist monastery, and join a meditation class.

Lombok is the perfect compliment to Bali, just across a narrow strait but different in both culture and faith. While in Lombok, explore the village of Kuta, where you’ll find small restaurants with fantastic local seafood curries, an uncrowded beach, and nearby nature escapes that are easy to access by taxi or tuk-tuk. Thrill-seekers can trek on the slopes of the towering volcano, Mount Rinjani, or for a more relaxed experience, you could take a guided jeep tour around the blue-green caldera lake, Segara Anak.

The port of Benoa is the main southern gateway to Bali for cruise ships, and a short distance from the island’s principal city, Denpasar. Take a day trip to artsy Ubud for colorful café scenes, yoga, artisan gift shopping, and a deliciously healthy acai bowl to feed the soul. Enjoy thrilling water sports like kitesurfing, wakeboarding, and jet skiing on Tanjung Benoa Beach. Visit the Pura Dalem Ning Lan Taman Beji temple site to reflect on the island’s intricate and harmonic blend of both Buddhist and Hindu traditions, where three majestic gates made of white-hued sandstone greet worshippers and visitors.

Indonesia Cruise Itineraries

Cruises to Indonesia cover a wide range of ports and countries in the region. They typically sail for about 11 to 15 nights, and include between three and eight days at sea, depending on your itinerary. Options include voyages between Bali and Singapore, or Sydney and Singapore, with some cruises overnighting in Benoa. Most set sail between October and March, at varying times throughout the week.

Itineraries

Why cruise to indonesia with celebrity cruises.

From idyllic tropical island retreats to palm-fringed white sand beaches, cruises to Indonesia offer a wonderful taste of some of the best that Asia has to offer. You’ll sail on the revolutionized Celebrity Millennium, the modern and stylish Celebrity Edge, or the elegant and exciting Celebrity Solstice.

Enjoy world-class dining with exclusive service offerings on each ship as you sail to Indonesia and throughout the region. Treat yourself to rejuvenating spa treatments, or spend sea days relaxing by the sparkling pool. Step out over the sea on the one-of-a-kind Magic Carpet, the world’s first cantilevered platform that floats over the ocean on Celebrity Edge. No matter which itinerary you choose, you’ll enjoy impeccable service, thrilling port destinations, and elegant accommodation with Celebrity.

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Ultimate luxurious voyage aboard luxury yachts: The best Indonesian cruises 2024/25

best indonesian cruises

1. Komodo Season: May to September

Set sail from Labuan Bajo starting in May, where our yachts await to transport you to the enchanting Komodo Islands & Sumbawa. From May to September, bask in the dry season’s glory, ideal for cruising these pristine waters.

Private Yachts in Indonesia

Indulge in a minimum of 5 nights to fully absorb the wonders of Komodo National Park, or extend your adventure to 10 nights to include the mesmerizing Sumbawa Islands. With convenient access via short flights from Bali or Jakarta, Komodo beckons as the ultimate destination for exploration and relaxation.

Enhance your voyage by combining it with a Bali and Flores expedition. For tailored itineraries and expert guidance, contact our charter specialists to craft your perfect voyage.

  • Key attractions: Komodo dragons / Manta rays / Taka Makassar / Whale sharks / Padar Island
  • Main activities: Snorkeling / Scuba diving / Trekking / Kayaking in bays
  • Suitable for : Group of friends / families with young kids / honeymoon cruises
  • Exclusive Recommendations for Your Voyage: Start your trip in Bali, the island of Gods and combine with a cruise to Sumbawa and land exploration of Flores island.

Request a crafted itinerary from our team

2. Raja Ampat Season: November to April

From November to April, our fleet of private luxury yachts—Dewata, Nataraja, Senja—grace the azure waters of Raja Ampat. Prepare to be mesmerized by the unparalleled marine biodiversity and natural splendor of this tropical paradise.

Pacific High private luxury yacht Senja in Raja Ampat

Experience peak season from November to December or opt for a quieter retreat from January to March, when the tranquil ambiance is perfect for a winter getaway. Our meticulously planned itineraries, tailored to weather conditions, guarantee a seamless and enjoyable journey throughout.

  • Key attractions: Misool, Cape Kri, Wayag, Stingless jellyfish in Lake Lenmakana, Kali Biru 
  • Main activities: Snorkeling / Scuba diving / Trekking / Kayaking / Visit of traditional local villages / Birds of Paradise
  • Suitable for : group of friends / families with young kids / honeymoon cruises
  • Special recommendations : Start your trip in Bali and arrive in Sorong fully rested to start your cruise. If you are looking for extra days of navigation, we recommend extending your cruise with us including Triton Bay to get the chance to spot whale sharks. If you are keen to discover Papua, we can work with our trusted partners for a land trip in East Papua to get to visit tribes.

Read more about the advantages of a cruise in Raja Ampat

3. Special holiday cruises: Christmas & New Year 2024

Our fleet of yachts is available for special cruises during Christmas & New Year in Raja Ampat. The spots are usually booked early as this is a peak season and probably one of the most magical ones for our guests. Forget about snowballs & fireplaces; Christmas in Indonesia will have this special touch with palm trees, private beach massages, and extraordinary underwater adventures. And where better to enter 2025 in style than with open sea views, enjoying handmade cocktails and champagne, as well as a special celebration dinner? Even far away from home, we can still cater a Five-Star Dinner, including lobsters, Foie Gras & oysters.

Pacific High luxury yachts in Indonesia serving the finest champagne

For kids, the experience is nothing less than a fairy tale. With days filled playing on the beach, building castles with our crew, they will enjoy star gazing, imagining when Santa’s sleigh will pass over your yachts to drop their presents. Waking up in the morning’s first hours with a beautiful sunrise and a mesmerizing Christmas breakfast with fresh bread, pastries & juices, or anything that would please you more.

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4. Dive deeper into the wonders of the Maluku Islands and Halmahera

Some destinations, still hidden from the mainstream tourist radar, offer unique opportunities for exploration via yacht due to their remote and challenging accessibility by land. Among these are the Maluku Islands, often referred to as the Spice Islands, and Halmahera. These regions are a haven for enthusiasts of underwater exploration, catering to scuba diving aficionados and adventurers alike.

Private Yachts in Indonesia

Imagine the luxury of a private yacht coupled with the thrill of an explorer’s journey. Spend your days both beneath the waves and on the surface, where encounters with majestic manta rays and elusive hammerhead sharks await. Delve into lush rainforests, perfect for immersive birdwatching experiences.

And when it’s time to unwind, nothing compares to the tranquility of Kei Island. Renowned for its pristine beaches, it stands as one of the world’s most captivating coastal gems. Whether you seek adventure, relaxation, or a blend of both, these destinations promise unforgettable experiences for intrepid travelers.

White sand secluded beach in Halmahera in Indonesia

  • Key attractions: Kei Island / Rock carving / Caves painting / Manta Rays / Mangrove Forests / WW2 wreck diving / Hammerhead sharks / Manusela National Park / Ternate / Volcano / Rainforests
  • Main activities: Scuba diving / Snorkeling / Trekking / Kayaking / Bird watching 
  • Suitable for group of friends / families / adventurers
  • Special recommendations : Start your cruise in Sorong or Ambon and combine with Raja Ampat for a all in one experience with some of the most beautiful remote islands to visit in the world

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best indonesian cruises

Komodo Yacht Charter – The best way to explore Komodo National Park

Experience the unparalleled Komodo Yacht Charter with Pacific High’s fleet of private luxury yachts in Indonesia. Komodo allures adventurers in search of relaxation, scuba diving, snorkeling, and trekking amidst stunning wildlife.

Private Yachts in Indonesia

Raja Ampat Itinerary Cruise: Misool & Wayag (11 Days / 10 Nights)

Embark on a two-week private cruise to explore the splendor of Raja Ampat, Indonesia. Delve into the wonders of this breathtaking destination, immersing yourself in the rich marine life and stunning landscapes. Dive into the vibrant underwater world of Raja Ampat, home to a diverse array of marine species, and explore the pristine beaches and lush jungles of the islands.

best indonesian cruises

How to book a private yacht charter in Indonesia?

Plan your exclusive cruise holiday in Indonesia with Pacific High, the top yacht charter brokers. Let our expert team find the ideal yacht from our own fleet, ensuring complete control over the process. Benefit from our trusted partners for more yacht options if our yachts are fully booked.

best indonesian cruises

Why go on a private yacht charter in Indonesia?

Chartering a private yacht allows travelers to craft their own bespoke itinerary, sailing through turquoise seas, discovering hidden coves, and diving into vibrant coral reefs teeming with marine life. From the iconic Komodo National Park to the remote Raja Ampat archipelago, every stop promises a unique and unforgettable experience.

best indonesian cruises

Best Komodo Itinerary Cruise: North & Central Komodo (6 Days / 5 Nights)

Set off on an amazing trip through Komodo National Park in less than a week, diving into its stunning scenery and amazing animals. Encounter the famous Komodo dragons and snorkel in crystal-clear waters full of colorful fish. This plan guarantees an exciting adventure for anyone looking to explore this incredible Indonesian treasure.

best indonesian cruises

Komodo Itinerary Cruise: Combine Komodo & Sumbawa (14Days / 13Nights)

Discover Indonesia’s splendor on a two-week private cruise, exploring Komodo National Park and Sumbawa Island. Dive into the wonders of Komodo both underwater and on land, and venture off the beaten path to encounter whale sharks in Saleh Bay.

Pacific High

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Ombak Putih

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  • 9.3   Superb
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Bugis

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Situju7 Cruise

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  • 8.8   Fabulous
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Navila

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Adventure Cruises in Indonesia

Explore the Indonesian archipelago's tropical islands, with friendly locals and untouched by mass tourism.

Indonesian cruises will take visitors through one of the most beautiful yet comparatively unexplored countries in the world. Though Bali has a well-developed resort culture, the rest of the country is largely untouched by tourism and ripe for explorations and discovery. With over 13,000 islands, Indonesia is the world’s largest archipelagic country and best explored aboard a small boat cruise. A cruise of the Indonesian islands takes visitors from the beaches of Bali and Sasak villages of Lombok, to the dragons of Komodo and the stone spires of Raja Ampat, not to mention the volcano-studded Spice Islands and the remote isles of Southeast Sulawesi.

A luxury small ship cruise in Indonesia will take visitors to some of the archipelago’s best and most beautiful islands. Sailing through the Indonesian islands on a traditional Indonesian phinisi ship will give visitors the opportunity to indulge in some of the best snorkelling in the world, to explore remote islands and hike through jungles to spectacular waterfalls and a chance to interact with locals. Meanwhile, for the more adventurous traveller, thrill at the chance to explore sea-flooded caves and visit the islands Rinca, Komodo or Padar to encounter the famous Komodo dragons.

Bali is arguably Indonesia’s best known island and the starting point for many Indonesia cruises. Small boat cruises typically focus on the outlying, less-visited Nusa Penida islands of Nusa Lembongan, Nusa Ceningan and Nusa Penida itself. Here, visitors find the Bali they dreamt of, studded with secluded beaches and karst caves. From the uninhabited island of Pulau Menjangan, visitors can snorkel with clownfish and angelfish.

Lombok is considered one of Indonesia’s best islands, given its gorgeous beaches, mighty waterfalls and the unique culture of the Sasak people. Visitors to Lombok will hike through the jungle to the spectacular Sindang Gila, a 40-foot tiered waterfall, before visiting the village of Senaru to delve into the Sasak people’s unique blend of ancient Animism and Islam. Much of Lombok’s beauty, however, is found off the main island and under the waters surrounding the nearby Gili Islands, including beautiful Gili Sulat, site of some of the best snorkelling in the region.

Komodo is famous for its Komodo dragons, but this driest of the Indonesian islands has so much more to offer than its monsters! Arid and hot, Komodo island and its sisters, Rinca and Padar, are rife with wildlife, from large mammals such as deer, buffalo and wild pigs, to sulfur-crested cockatoos, jungle chickens, and the white-breasted sea eagle, while sharks and sea turtles cruise undersea. But, let’s be honest, most visitors come for the Komodo dragons , the largest lizards in the world. Komodo National Park, which encompasses all three main islands, is home to over 3000 dragons, giving travellers plenty of opportunities to spot one of these near-mythical beasts—from a distance, of course . . .

Raja Ampat is a series of hundreds of islands, with most Indonesian sailing cruises visiting the islands of Misool, Batanata and Waigeo. Visitors will drift through the mushroom-shaped karst spires of Misool in search for cave paintings and undersea graveyards, hike through the mangrove forests of Batanata to splendid waterfalls, and visit traditional fishing villages on Waigeo. Meanwhile, animal lovers can scan the canopy for birds of paradise and snorkel the crystal waters in search of sharks, manta rays and seahorses.

The Spice Islands , also known as the Moluccas or Maluku Islands, played an important role in the spice trade. For over a thousand years, the islands have been the source of spices such as cloves and nutmeg, which were then valued nearly as highly as gold. Indonesian cruises to the islands include a deep dive into the history of the islands, the spice trade and the opportunity to visit the nutmeg plantations still in use today. In addition, the Moluccas feature spectacular palm-lined beaches and towering volcanoes, including the still active Gunung Api.

Southeast Sulawesi is especially untrammelled by tourists and Indonesian cruise itineraries including this region are often new, giving travellers an opportunity to feel like real explorers and pioneers. Sulawesi cruises travel across the Flores Sea, stopping along the way to explore the area’s many islands and atolls while watching for manta rays and whale sharks. In the area of Botubarani, visitors may get the chance to swim with these gentle giants. Village visits will allow visitors to engage with the locals and experience the unique cultures of this remote land.

Kalimantan , also known as Central Borneo, has been called Southeast Asia’s Amazon, due to its thick jungle, meandering rivers and varied wildlife. Among its many animal species, though, Kalimantan’s most famous resident is without question the orangutan. Certain Indonesia cruises will include an initial stop and river cruise through parts of Kalimantan, allowing visitors the opportunity to experience a true jungle adventure, complete with face-to-face encounters with the red-pelted orangutans.

Best time to cruise Indonesia

Indonesia is a large country, stretching across the equator from Southeast Asia into Oceania. Given this, it experiences a varied climate which will differ from region to region and even island to island. It is essential to plan ahead as the best time to visit Indonesia will depend on your chosen small boat cruise itinerary and the islands included.

October to April in Indonesia is the wet season in Bali and Lombok, with higher humidity and more frequent rains. This period, however, is the dry season in the Spice Islands and Papua.

May to September in Indonesia are the dry season throughout the islands, except in the Spice Islands and Papua, where it will be rainier and more humid.

Note that July and August are the peak season in Indonesia, with far more tourists and higher prices.

It should also be noted that June and July in the Indonesian region of Raja Ampat is unofficially considered windy season, when the waters may be choppier and small boat cruises slightly less comfortable.

How to get to Indonesia?

Flights to Indonesia will typically be to Soekarno-Hatta International Airport, in Jakarta, on the island of Java, or to Bali’s Ngurah Rai International Airport, also known as Denpasar International Airport. From either international airport, visitors can fly to their Indonesian cruise departure point. Note that direct flights to Indonesia are rare from Europe or North America. Many cruise departure points will require a connecting flight within Indonesia.

Where do Indonesia cruises depart from?

Indonesia luxury cruises typically depart from Sorong, on West Papua, from Ternate, in the Spice Islands, from Labuan Bajo, on Flores, from the island of Bali, or from Gorantolo, on North Sulawesi.

If your cruise departs from Bali , you will fly into Ngurah Rai International Airport, also known as Denpasar International Airport, and make your way to Sanur, a popular meeting point for Indonesia cruise operators on Bali. From Sanur, a shuttle will take you to Padang Bai (also called Padangbai and Padang Bay) or Amed, approximately two hours from Sanur. This is a common departure point for cruises that include the Lesser Sunda Islands, such as Bali and Lombok.

If your chosen cruise leaves from Labuan Bajo , on Flores, you will fly into Bali’s Ngurah Rai International Airport, also known as Denpasar International Airport, and fly to Flores, with a possible connecting flight in Makassar, on South Sulawesi. This is a common departure point for cruises of Komodo and the islands of Nusa Tenggara

If your cruise leaves from Sorong , on West Papua, you will fly to Jakarta or Bali and, from there, fly to Sorong, with a possible connecting flight in Makassar.

If your cruise leaves from Ternate , you will fly into Jakarta or Bali and, from there, fly to Ternate, with a possible connecting flight in Makassar. This is a common departure point for cruises of the Spice Islands.

If your cruise departs from Gorantolo , you will fly into Bali and, from there, fly to Gorantolo, with a connecting flight in Makassar. This departure point is for Sulawesi cruises only.

If your cruise includes Kalimantan , you will fly into Jakarta or Bali and, from there, fly to the town of Palangkaraya, on Kalimantan. After the Central Borneo portion of your trip, you will return to Jakarta or Bali to continue your small boat cruise.

Indonesia Cruise Tips

  • Indonesia cruises offer a variety of experiences and activities so plan ahead when deciding on an itinerary.
  • If your arrival includes a connecting flight within Indonesia (in Makassar, for example), it is recommended to arrive at least a day before your Indonesian cruise departure date.
  • Indonesia luxury cruises offer ample opportunities for snorkelling so you may wish to bring your own gear.
  • Much of Indonesia’s beauty is found underwater, so a waterproof camera is recommended.
  • Though each island and region has a dry and wet season, note that a tropical climate means it could rain at any time, so pack accordingly.
  • Sunscreen and plenty of water are a must when visiting Komodo’s arid interior.
  • Note that passports must be valid for six months to be allowed into the country.
  • If you are asked to fill out a disembarkation card, you will need to keep your half so as to hand it back upon leaving the country.
  • The 30-day visa is the most common and will likely accommodate any Indonesian cruise itinerary. Visas can be applied for in advance, which is recommended, or upon arrival. Visas on arrival cost $35 US dollars and the exact amount, in US currency, is required.

Please contact our reservations team to book your next small ship cruise to Indonesia.

Indonesia Reviews

  • 12 Verified Reviews
  • 9.6 Exceptional

A definite experience to be repeated and we would love to do the Raja Ampat and Papua cruise next

Cruising Indonesia in September on the Ombak Putih

  • 10.0 Exceptional

fabulous Island cruise

Cruising Indonesia in May on the Ombak Putih

The best trip I’ve ever booked!

Cruising Indonesia in March on the Bulan Purnama

  • 8.4 Very good
  • Alexander S

Will sign again and I’m hungry for more!

Cruising Indonesia in July on the Bulan Purnama

So far so good - but no diving on Katharina.

Cruising Indonesia in December on the Katharina

Just Snorkelling but excellent

Cruising Indonesia in December on the Bulan Purnama

Wonderful the area is beautiful and fulfils the dreams of sailing through the most picturesque tropical islands

Cruising Indonesia in December on the Ombak Putih

We only did snorkeling and not diving, but all the reefs worked well for us and had much to offer.

  • 8.0 Very good

We had a great time. The crew were fabulous and Liveaboard and the operator were both very responsive to our enquiries. On board alcoholic drinks were reasonably priced.

Cruising Indonesia in February on the Katharina

Only snorkeling. Love the warm waters and nice reefs

Cruising Indonesia in March on the Navila

  • 8.8 Fabulous

Snorkeling was the best I've experienced - saw turtles, manta ray, shark, so many fish, colorful coral.

Cruising Indonesia in June on the Navila

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Cruise Indonesia

Aerial view of karst gum drop islands in turquoise sea with 2 small Zodiac boats cruising under bright skies in Indonesia.

Authentic, Active Indonesia Cruises

Our Indonesia small ship cruises include a range of itineraries from classic Bali cruises to farther-flung routes. Experience Raja Ampat’s famed underwater world scuba diving or snorkeling alongside skilled naturalist guides. Tap into the the history and markets of the Spice Islands. Island hop around Komodo National Park to see the world’s largest lizard…

Our Indonesia cruises epitomize small, sustainable travel in the region, with a focus on wildlife and local culture. Our team is here to assist you one-on-one to select and book your trip. Browse our well-rounded Indonesia cruise selection and let us help you sort through the options to ensure you get on the best itinerary for your interests.

Experience Indonesia's whale sharks, corals & dragons round-trip from Flores aboard the 24-guest Ombak Putih or 12-guest Katharina. Encounter the famous Komodo dragon, swim with whale sharks, snorkel in pristine coral reef and explore beautiful deserted beaches.

Embrace culture, nature and wildlife on this 8-day Spice Islands cruise aboard the 30-passenger luxury Indonesia yacht Aqua Blu, including regular dive opportunities.

Experience the best of Indonesia travel aboard the 24-guest Ombak Putih or the 12-guest Katharina sailing vessels. This 10-day round-trip cruise from Sorong, West Papua, explores the natural splendor of Raja Ampat, home to the world's most biodiverse coral reefs.

A female traveler in a green shirt standing on a wooden walkway on top of a steep grass covered hill surrounded by water.

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Cruise Indonesia with AdventureSmith

AdventureSmith’s cruises let you experience Indonesia’s wide expanse of islands in an active, efficient way. From the Spice Islands to Bali, let our experienced team guide you through the wide array of small ship itineraries. Why choose to cruise Indonesia with us?

Personalized

Work with one dedicated U.S.-based specialist to purchase & prepare for your Indonesia cruise.

We can match you with trusted Indonesia small cruise ships, all intimate at under 120 guests.

Our relationships & on-the-ground travels result in tried & trusted, reputable cruises.

Our Indonesia cruises include guided snorkeling, scuba diving, hiking & skiff rides.

A two-masted Indonesia sailing ship sits at anchor in bright blue water with green tree leaves in the foreground

The Lay of the Land

At nearly 750,000 square miles, Indonesia is the world’s largest island country and the seventh largest by combined sea-and-land area.

Unless you have unlimited time, you simply cannot sail/see it all in one cruise itinerary. Thus, understanding the regions and knowing what you want out of your travel experience and ship are paramount.

Cruising Indonesia for Wildlife

While wildlife encounters can never be guaranteed, seeking out endemic creatures is half the fun. In Indonesia, you can set your sights on Komodo dragons, birds-of-paradise, whale sharks and manta rays, among other exciting animals, but there are geographical nuances to consider.

Komodo and Rinca Islands are the islands to visit if you are keen to see Komodo dragons. Snorkeling near Flores Island will offer you the best chance to see manta rays and sea turtles in deep currents, and some Raja Ampat routes hone in on the best chances to spot birds-of-paradise. Learn more in our guide to the regions below.

A close up of a komodo dragon's head and two arms with its forked tongue sticking out

“Our Indonesia small ship cruises focus on activity, wildlife & exploring remote islands.”

Lesser Sunda Islands: Flores, Komodo & Bali Cruises

The most popular cruise itineraries are located in the Lesser Sunda Islands, perhaps due to the international airport on Bali and the island being a household name in travel thanks to its many established resorts. From west to east, the Lesser Sunda Islands comprise Bali, Lombok, Sumbawa, Flores, Sumba, Timor, the Alor archipelago, the Barat Daya Islands and the Tanimbar Islands, with the most common expedition cruise routes sailing regularly between Bali and Flores.

Each of these islands are different in their own right with myriad earthy highlights including volcanoes, rainforests, waterfalls, mangroves, white-sand beaches and even savannah. This diverse landscape also holds a variety of wildlife that includes Komodo dragons (Rinca & Komodo Islands) and manta rays in the deep channels that separate the Indian Ocean from the Pacific. Traditional lifestyles, quiet coastal villages, tribal rituals and intriguing ancestral traditions are also a major draw for travelers to the Lesser Sundas.

A man in boardshorts and no shirt stands on a hilltop above a small sandy beach peninsula with no one on it and a small ship and volcanoes in the water below

Raja Ampat Cruises

For travelers looking for an immersive experience into the natural world of Indonesia, a cruise through the archipelago of Raja Ampat is the ideal modality. Located right in the heart of the Coral Triangle, this biodiverse area contains 450 species of reef-building coral, 1,400 species of fish and intriguing endemic sea life—the stingless jellyfish of the brackish interior lakes being the perfect example.

This kaleidoscopic underworld is ideal for the avid diver or snorkeler and pairs nicely with the stunning karst islands and unique bird life, including striking birds-of-paradise. The island biogeography of these birds helped Alfred Russel Wallace formulate his theories of speciation, much like the finches of the Galapagos did for Charles Darwin.

Additionally, voyages in Raja Ampat offer adventures hiking, exploring caves and inner-island jungle walks to stunning waterfalls.

A small ship anchored in turquoise waters among several islands in Indonesia.

New Guinea Cruises (West Papua & Papua New Guinea)

While West Papua is technically the only territory of Indonesia, the island of New Guinea is often an itinerary stop or embarkation point for many Indonesia cruises. Many Raja Ampat cruises begin their journey in West Papua out of Sorong.

Like its neighbor Raja Ampat, New Guinea is a hotspot for birds-of-paradise, but even more so as all but two genera are found here. At their core though, trips to New Guinea are truly cultural, offering a look into a world that very few outsiders see.

West Papua and Papua New Guinea cruises highlight remote villages, traditional art and authentic rituals providing human connection with peoples that are living a very similar life to their grandparents, quite the feat for the twenty-first century. Papua New Guinea is also home to stimulating World War II history and is dotted with historic places of interest, monuments and tributes honoring the fallen. The colorful biodiversity of the underwater world delivers the perfect balance to days filled with culture and history.

Local village children dressed in tribal wear in Indonesia.

Spice Islands Cruises

Indonesian Spice Islands cruises offer a unique historic experience and deep cultural interactions among beautiful islands. The Spice Islands were mapped on ancient trade routes long before the Europeans even began searching out the Islands’ nutmeg, cloves, mace and pepper. The Portuguese, the first Europeans to start trading spices on a large scale from the Spice Islands in 1598, cornered the market for almost 80 years, infusing the area with Portuguese culture.

The clashes between the varying nations and cultures in the region for centuries offers a fascinating historic journey that can capture any traveler’s imagination. Remnants of this highly utilized trade route are still seen today on Spice Island cruise itineraries that also can include snorkeling with whale sharks; exploring lush national parks; visits to traditional villages, colonial forts and palaces; and ideal snorkeling, diving and underwater adventures.

Various local spices set out in bowls at a market in Indonesia.

Sulawesi Cruises & Kalimantan (Borneo)

Sulawesi, the Indonesian island east of Kalimantan (Borneo) and west of Raja Ampat, is perhaps the most unknown gem of the country’s many islands. Its shorelines and atolls are freckled with human settlements that rarely see tourism, so this is a land of true adventure travel and modern cultural experiences. Villages here are authentic working/living places for a variety of locals who make their living farming and fishing. This includes the nomadic Bajau people, commonly called the sea gypsies.

The unique shape of the island into several long peninsulas offers coral reefs alongside varied coastal geography ranging from steep mountains to palm-lined beaches. The Togean Islands offer chances to swim with stingless jellyfish, and keen eyes should look for tarsiers and macaques. Sulawesi is also home to the Bugis, Indonesia’s famed shipbuilders, so your itinerary may include seeing giant wooden vessels being built on the beach.

If orangutans are on your bucket list, be sure to look for Sulawesi cruise itineraries that include stops in Borneo. Several of our trips include stops or pre-cruise trip extensions here.

Indonesian children at a school sitting at a wooden desk

A Note About the Wallace Line

Indonesia is famous for the Wallace Line, a faunal boundary separating two eco-zones (Asia and Wallacea, the transitional zone between Asia and Australia). The “line” was drawn by naturalist Alfred Russel Wallace in 1859 and runs between Borneo and Sulawesi down to the strait between Bali and Lombok. Traveling around this line is a thrill for naturalists as it’s one of the most distinctive biogeographic areas on Earth. West of the line you will find larger terrestrial mammals (tigers, elephants, orangutans), and east of the line look for marsupials, Australian cockatoos and birds-of-paradise. The Indonesian island of Sulawesi is an interesting exception to the Wallace Line with black macaques, pigs and tarsiers.

Java & Sumatra Cruises

Most itineraries explore Indonesia from points north and east of Bali. However, select itineraries will cruise along the western Indonesian islands of Java and Sumatra, linking up with Singapore. While Java is home to a majority of the Indonesian population, small ship cruises here will opt to mostly visit uninhabited offshore isles and small villages. In this region travelers can explore unspoiled coral reefs, deserted black- and white-sand beaches, lush jungle and child volcanoes of the famous Krakatoa.

The Places in Between: “Positioning” Indonesia Cruises

A fun way to see Indonesia is to “position,” or cruise with the boat as it sails between these iconic regions. These trips are often longer in length and include more days at sea (sailing vs. venturing off the ship) but connect you to the unseen places of Indonesia and allow you to relax with the rhythm of the ocean. Positioning cruises are also excellent choices to add on to a voyage. For example, a three-week positioning itinerary could be to sail south from Sulawesi to Flores, then stay on the ship all the way west to Bali!

FIND AN INDONESIA CRUISE

See all the expedition cruise options in Indonesia.

Temperature & Rainfall

Year-Round Indonesia Cruising

Indonesia cruises are available every month of the year, but ships often follow the trade winds and weather patterns to sail certain locations during their drier, less-windy months. If you are seeking to visit Raja Ampat, for example, plan your trip in the winter months (roughly, October through February). If your course is set on a Bali cruise, you can look for most sailings running from March through September. Climate data listed above is from Denpasar, Bali.

Seeking More Details about Weather, Regions & Wildlife?

100+ combined years of experience, 7 continents explored, decades of expedition cruising around the world & here to help you find & book your dream trip.

Small Ships & Yachts Sailing Indonesia

Numerous small ships of varying sizes and styles sail Indonesia, and our variety hold anywhere from 14 to 120 guests. You can certainly go the way of day boats to cruise Indonesia, but selecting a first-class, seaworthy and safe vessel is of the utmost importance among these far-flung island chains. Thus, we highly recommend going beyond the day-tour circuit to more remote reaches via expedition ships. In Indonesia, our partner vessels range from classic wooden Indonesian sailing vessels that lend an authentic, romantic cruise vibe to scuba-equipped luxury yachts and exploration-focused, state-of-the-art expedition vessels that travel farther, faster with all the latest gear. Knowing your preference for ship style, activities and amenities will help narrow down your cruise choices.

The 24-guest sailing vessel Ombak Putih combines traditional and modern design to bring authenticity and comfort to her itineraries in the Ring of Fire region stretching from Bali to the Philippines.

The 120-guest Coral Adventurer Australian expedition ship offers a wine cellar, open galley, private balconies and efficient ship-to-shore operations.

The Aqua Blu carries her 30 guests in high luxury, comfort and safety while sailing through Eastern Indonesia. Embrace history and luxury on this unique cruise ship.

Katharina is a 12-guest sailing vessel whose adventures explore the Ring of Fire, the string of volcanic islands that stretch out from Bali east to the Philippines.

Indonesia Small Ship Cruise Reviews

What is it like to take a small ship cruise through Indonesia? Experience sailing a traditional Indonesia style ship through the eyes of small ship experts who have traveled aboard these classic vessels. Plan your perfect trip with insider information from a variety of Indonesia cruises and Indonesia small ships. Read on for all of our Indonesia cruise reviews.

AdventureSmith's Director of Sales & Operations reviews his Raja Ampat cruise aboard the 24-guest Ombak Putih. Follow his adventures swimming with stingless jellyfish and seeking out the famed bird-of-paradise.

AdventureSmith sails Indonesia's most remote reaches, along the eastern coast of Sulawesi. Learn our insights on this trip and the highlights of a Sulawesi cruise.

Learn about the food, cabins, crew and more from AdventureSmith experts who've been aboard these unique Indonesian sailing vessels.

An AdventureSmith cruise expert goes aboard in Australia to write this ship review of the 120-guest Coral Adventurer. Read about her favorite features and cabin insights.

An intimate look at island hopping in Indonesia between Bali and Flores. Learn why this trip is the perfect fit for AdventureSmith's style of cruising.

What Travelers Say About Their Indonesia Cruise

Fantastic boat with an amazing crew. What a great adventure exploring the small islands of Indonesia. The snorkeling was the best I've experienced anywhere in the world.

The quality of the guide, the crew and the ship were far above our expectations. The itinerary was very enjoyable. The early trip to Komodo island was very rewarding and the timing and variety of snorkeling was excellent.

The trip overall was unforgettable. One of the best parts was not having to figure out every step of the trip after/during planning a wedding. Knowing that AdventureSmith was in charge of the major details and 10 days of our trip, as well as internal flights were all organized was an important load-lifted off our shoulders.

Great guides together with the very enthusiastic and helpful crew made it a great voyage. If you like small boat cruising and snorkeling, this is the trip for you with the unique Komodo Dragons as a special plus.

We went to untouched places that we didn't know existed in Indonesia. We were able to still see all the hot spots in Bali on our own before we took this cruise, but this offered something entirely different than any of our friends had ever experienced in Indonesia.

Overall trip was amazing. Absolutely no issues logistically. Unless you have months on your hands to stumble around foreign countries and really figure it out on your own, a quality specified travel agency like Adventuresmith is absolutely necessary for a trip of this caliber.

Fantastic boat with an amazing crew. What a great adventure exploring the small islands of Indonesia. We most enjoyed Rinca to see Komodo dragons! The snorkeling was the best I've experienced anywhere in the world.

Meals Review

Great food and great crew!

Traveler Advice

Sea was a bit choppy the first couple of days, but not much you can do about that!

AdventureSmith Explorations Review

They helped us organize all our flights.  Even reached out to check in on us when there was an airport closure due to volcanic activity. 

Featured in this Traveler Review

  • Sailing Indonesia: Whale Sharks, Corals & Komodo Dragons

The quality of the guide, the crew and the ship were far above our expectations. The itinerary was very enjoyable. The early trip to Komodo island was very rewarding and the timing and variety of snorkeling was excellent. Also really enjoyed the trip to the active volcano and exploring the local shipbuilding village there. The trip to Rinca was short, I thought we could have been given the option to spend some more time there.

Accommodations Review

The ship was beautiful and kept in excellent shape by the crew. A memorable experience to sail on Katharina. My only complaint was that the sails were not able to be put up.

The chef on Katharina was INCREDIBLE. Loved the food and the variety. Rotation of meals over the week was also highly enjoyable. 

Crew & Guides Review

Ari far exceeded our expectations. He knew so much about the local culture, the history of the area, the boat and the wildlife given his more than 20 years of experience. He also made sure that we had the best guides wherever we went. In addition, he was professional, friendly, approachable and organized.

We had excellent communication with our AdventureSmith contact Nick. He answered all of our questions in a timely fashion and we were well prepared for the trip.

We had an excellent trip aboard the Ombak Putih for our honeymoon. One of the best parts was not having to figure out every step of the trip after/during planning a wedding. Knowing that AdventureSmith was in charge of the major details and 10 days of our trip, as well as internal flights were all organized was an important load-lifted off our shoulders. The trip overall was unforgettable. Misool was beautiful- loved the jellyfish lake and cave exploration. The snorkeling, beach and view of Wayag was just idyllic and my favorite place of the trip. The oyster farm we visited was neat but the bay we stayed in wasn't the best- filled with plastic and felt less remote and beautiful with the oyster farm surrounding us. Loved getting to know the knowledgeable, like-minded travelers aboard. One of the best parts of the trip! This trip had a lot of snorkeling, which was great, but could have had a little more variety in activities. I know this was the action and adventure departure, but it was unclear that that just meant more snorkeling.

The Ombak Putih is a rad ship! We felt like we were pirates exploring the islands. I also feel that the traditional pinisi boats (as there were a few around) just fit right into the landscape, whereas the more yachty or modern boats seemed out of place.

Lots of variety. Loved the lemongrass flavorings. Could have more Indonesian foods, felt odd seeing a lot of red meat, cheese and smoked salmon when we can tell these items had to travel far to get there.

Great people. Fun to be around. Could fine tune their presentations and become stronger speakers for the evening presentations, but did a great job making everything run smoothly and keep us occupied.

Transportation Review

Our internal flights were arranged for us, as well as transfers to and from the ship which made our Indonesia domestic travel flawless.

The packing lists, online forms and the arrangements made were all excellent and timely. My friends and family would love to experience the magic of small ship travel that AdventureSmith offers.

If you get cold in the water bring a wet-suit top at least. The water is warm, but for us who tend to be cold just a little extra layer can make it so much more enjoyable. Also some people had long, thin rash-guard pants which were great protection against the annoying sea lice and jellyfish that we would encounter.

  • Sailing Indonesia: Jewels of Raja Ampat
  • Ombak Putih

Great guide together with the very enthusiastic and helpful crew made it a great voyage. The snorkeling was excellent; many fishes together with turtles, rays and manta rays. [We also enjoyed] seeing the Komodo dragons. The fellow travelers were a very nice diverse group who mixed well.

Cabins were small but quite adequate. Food was very good and the bar prices very reasonable.

The food was delicious and there was always a choice of fish, meat and non meat dishes.

Ari made the trip a great success. Very knowledgeable and experienced. Organized everything extremely well.

If you like small boat cruising and snorkeling, this is the trip for you with the unique Komodo Dragons as a special plus.

What a trip and amazing ship! It was a special way to see Indonesia. We went to untouched places that we didn't know existed in Indonesia. Lots of snorkeling. Visited so many remote villages and had the children hold our hands as they took us around their town. We were able to still see all the hot spots in Bali on our own before we took this cruise, but this offered something entirely different than any of our friends had ever experienced in Indonesia and we feel like we really saw a "real" view of the country.

The Ombak Putih is a special ship. We were in awe of all the beautiful wooden touches - rare to find in the modern ships of today! Stairs are on the steeper side on the ship, so we made good use of the railings when at sea.

We ate like kings. Lots of healthy options, salads and fresh fish, but many treats and temptations to overeat too. A bit too many fried options for my taste, but others on board enjoyed and much was authentic to Indonesia - lots fried banana for snacks! 24/7 coffee and tea much appreciated and honor system tracking to grab your own drinks aboard and pay for at the end.

The crew was friendly and helpful, always with a smoothie ready when we came back on board in the heat of the day. We loved our guides Arie and Kees, who provided the perfect combination of education and adventure with their lectures and their snorkeling skills.

We would never have found this ship, or chosen this unique route, if it wasn't for AdventureSmith's advice and recommendation! Happy to have them as our sounding board for how to access the world's remote locations by small ship (we've done 3 trips). Their recommendations for us have always been spot on.

If you like to drink, take advantage of the opportunity to bring your own booze aboard to make your own cocktails! Bring a short wet suit or heavier rash guard top and tights as the water was on the cold side in certain locations.

  • Sailing Indonesia: The Undiscovered Frontier

Overall trip was amazing. Absolutely no issues logistically. We had a couple of days in Bali on our own prior to boarding the ship which made it easier to adapt to the weather, time change etc. SUP-ing into isolated islands with no one else around. Visiting remote villages that hadn’t seen any tourists since the last time our boat was there a year  ago. The genuine excitement of the kids wanting to show us around there village and home. The uniqueness of this trip was what really made the experience. It is a true adventure, there are no guarantees. Every day the group is coming up with plans based on weather, sea conditions, time frames, local advice and recommendations etc. You must be flexible and able to coordinate with the group, but this is what made it so fun. Of course the guides and the Captain had the final say. You could do this trip multiple times and never have the same experience (which some people on board had). There is a rough itinerary, but there are so many cool options and dynamic environment that it could easily change. Marine life, snorkeling, birds and komodo dragons. Truly Epic. Some people commented on a little too much time at sea. I enjoy boats and moving around but I would agree that it seemed a little hurried in 10-12 days to do the route we did. A few more days would allow for some flexibility and spending time at the more desirable locations, especially if we encountered inclement weather. [ AdventureSmith note that the itinerary was extended to 14 days in duration after this traveler's trip. ] We had a good group, however group dynamics on a small boat can play a role in activities. I personally would have liked a few more adventurous off boat excursions, however we did stay busy with fun activities daily.  No bad experiences.

The ship (Ombak Putih) was a beautiful, traditional, completely dialed Indonesian sailing vessel. The quarters below were not huge, but very clean, comfortable and as beautiful as the rest of the ship. Just the amount of hard work that went into this boat was breathtaking. We were lucky to have a small group (9), so there was plenty of deck space around to relax and not feel cramped. Even though this boat was equipped to sail if need be, we motored 99% of the time. We sailed 1 afternoon for fun, but there was no way we were going to cover the ground (almost 1000 miles) sailing the whole time.  Motor noise/exhaust was no issue at any time, night or day.

I couldn’t even think of anything I would change food wise. Amazing. Every stop we made, or local fisherman we saw, fresh fish and local goods were acquired. No food illness, water was processed on the boat etc. Beer was very reasonably priced. Cheaper than Mexico.

Unless you have months on your hands to stumble around foreign countries and really figure it out on your own, a quality specified travel agency like Adventuresmith is absolutely necessary for a trip of this caliber. Having firsthand knowledge of the ins and outs of small ship/remote world travel you’re in good hands. All connections and logistics where handled and everything operated smoothly. No problems.  Having spent so much of my life on the ocean, I love boats, marine life and accessing coastlines via a small boat or ship.  To me it really is the best way to travel. Whether you tie up in a large bustling port city, or anchor off a remote beach, it’s a whole different perspective than land travel. I look forward to another amazing boat trip with Adventuresmith in the future. 

Ari was our main guide. He was exceptional. An Indonesian and Sulawesi local. Though we had people from all over the world on the boat, English was primarily spoken and Ari was absolutely fluent. No missed communications, or misunderstandings, he was 1 step ahead all the time, with the safety of the group the priority. There were times we didn’t swim, go ashore, or go to certain areas because the Captain and Ari deemed it unsafe, mostly due to ocean conditions. Spending most of my life around the ocean, I understood and respected what they were talking about. This was very comforting to know how attentive they were.  Due to our remoteness on this trip, there was no margin for error or injury.  This isolation became evident not long after we set out, and the crew operated accordingly.  There was no hot dogging or showing off, it was all business.  One instance in particular we were snorkeling around a deep water reef with a lot of current.  We had 2 zodiacs in the water tending to the swimmers.  A large, Rogue dive boat trying to track across the channel started to get swept toward us under full power.  Ari in the zodiac recognize this immediately, drove the zodiac in front of the dive boat and started screaming at the captain.  The boat turned, got swept down current and had to come up the long way to the anchorage.  Without his quick response the boat would have come very close to us.  I was watching it all unfold and would have swam out of the way, but I can’t say that for the rest of the snorkelers, focused on the sea turtles!  Kees was also another exceptional guide.  Having moved to Jakarta from Europe 20 years ago he knew the culture quite well.  His expertise in birding was an eye opener for me.  Most nights he put on informative presentations regarding the next day’s adventures.  Another very smart, professional guide we enjoyed very much.   

Deals on Indonesia Cruises

For deals on Indonesia small ship cruises, contact the AdventureSmith experts. Our talented team can help you find the latest discounts, explain the ins-and-outs of the landscape and help you secure your top choice at the best rate. AdventureSmith recommends that you plan ahead for your small ship Indonesia cruise to take advantage of early-booking discounts, but we’re here to help those planning last-minute travel save as well.

Book your Southeast Asia cruise aboard Aqua Blu or Aqua Mekong to save 20-30% per person.

Solo travelers! Book your select 2024 or 2025 Southeast Asia cruise aboard Aqua Blu or Aqua Mekong and the single supplement fee will be waived.

Book the ultra-remote 10-day Ring of Fire alternative itinerary in 2024 and enjoy a free bar tab plus a complimentary hotel night on the eastbound route.

Book one of the below-linked Southeast Asia cruises aboard Aqua Blue to save up to 20% per person or save up to 30% per person aboard Aqua Mekong.

Offer valid on new bookings only, subject to availability and cannot be combined with any other offer. Applicable on suites 201 and 203 on Aqua Blu and suites 101, 102, 103, 104, 105 and 106 on Aqua Mekong. See all cruise deals for a comprehensive list of current savings on this and other adventures.

  • Aqua Blu Raja Ampat Cruise
  • Aqua Blu Ambon & Spice Islands Cruise
  • Aqua Blu Komodo National Park Cruise
  • Aqua Mekong River Cruise

Solo travelers! Pay no single supplement fee when you book your select 2024 or 2025 departure of the below-linked Southeast Asia cruises aboard Aqua Blue or Aqua Mekong.

Offer valid on new bookings only, subject to availability and cannot be combined with any other offer. See all cruise deals for a comprehensive list of current savings on this and other adventures.

Book the 10-day Ring of Fire itinerary of Sailing Indonesia: Whale Sharks, Corals & Komodo Dragons in 2024 and enjoy a free bar tab for the duration of the cruise. Plus, a complimentary hotel night (in Alor or Kupang) is included on the June 3, 2024, eastbound Ring of Fire from Komodo to Alor.

Offer valid on new 2024 bookings only, subject to availability and cannot be combined with any other offer. See all our small ship cruise deals for a comprehensive list of current savings on this and other adventures.

  • Sailing Indonesia: Whale Sharks, Corals & Komodo Dragons

Our Experts Are Your Ticket to Cruise Indonesia

Need help narrowing down all the Indonesia cruise options? Our experts are just a phone call or email away to assist you. Contact us to receive a personalized-to-you recommendation on the best Indonesia cruise for your travel style, budget and timing needs. Still want to research yourself?  Head to our Indonesia Cruise Finder .

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With more than 17,000 islands to explore, laying bare the longest stretch of coastline in the world, Indonesia is a world-class luxury-cruise paradise. Once a prominent spice trade hub, this island nation features boatloads of history to delve into through its various fishing towns and seaports, whether you are going the small-ship route, setting sail with one of the larger cruise lines or island-hopping around Indonesia itself on small tours within the region. Set sail for expeditions that involve whale sharks

and dazzling coral reefs, jungle serenity, hidden temples, scenic beaches and exotic animals, including Komodo Island’s famous monitor lizards, which can weigh up to 150 pounds. Indonesia luxury cruises dock in Belawan in Medan, North Sumatra; Tanjung Priok in Jakarta; Tanjung Perak in Surabaya, East Java; Makassar in South Sulawesi;

and Benoa in Bali. From Benoa, visitors can visit the art-filled, 13th-century Pura Kehen temple complex and the hilltop Uluwatu Temple to witness traditional dancing. Other top stops include the gardens and museum at Taman Ujung palace, and Nusa Dua Beach with its swath of five-star resorts at Bali’s southern tip. Over in the province of West Papua in the far east, on the island of New Guinea, ships dock at the city of Sorong, known as the gateway to the Raja Ampat Islands, a cluster of beautiful islands with amazing dive sites.

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Meet Our Indonesia Travel Designers

What is your approach to planning a luxury cruise? With new clients, I like to get to know them and really listen to their needs or wishlist, as well as asking all the appropriate questions to assist me in my research.

Jackie Grittani

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What is your approach to planning a bespoke luxury cruise? Learning about the clients past travel experiences (good or bad) to determine what would be a suitable fit for them moving forward. Also asking questions to understand the clients interests, preferences, wants and desires.

Cheri Ozimac

What is your approach to planning a bespoke luxury cruise? I try to find out what the client’s version of luxury is. What their interests are, do they like small ships or medium size. I ask what they are interested in spending and what kinds of trips they’ve done in the past.

If you’re considering bespoke private travel to Indonesia, let our expert Travel Designers make your vacation truly customized from start to finish. Having spent the last three decades travelling and experiencing the best luxury offerings first-hand, Tully Luxury Travel has an exceptional understanding of Indonesia. We have the contacts and the relationships in place to ensure your travel needs are met – milestone celebrations, romantic dinners, private tours, dietary requirements, special room-service requests – all the details curated in step with your every wish. In Indonesia, our Private Travel Designers have the insider information that will elevate your luxury experience that much more. Resorts in Indonesia range from the rustic-chic retreats in far off islands with glorious views of the beach to luxurious villas right in the heart of the action. Our travel designers will map out an adventure that is bound to leave you wanting more. The time to start planning your next vacation is now. Our Private Travel Designers secure the best amenities and VIP extras at no additional cost. That’s the Tully Difference. Talk with a luxury Private Travel Designer and start planning your bespoke luxury Indonesia vacation today.

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best indonesian cruises

Indonesia offers something for every adventurer — and you’ll find countless ways to explore this exotic archipelago on an Asia cruise with Holland America Line. Get a glimpse of Komodo Island’s infamous dragons, then follow the scent of Surbaya’s flower market to Jayapura, capital of the Papua province. From Benoa, you can visit Bali’s ethereal Taman Ujung Water Palace, sacred temples such as the Pura Kehen complex and clifftop Uluwatu Temple, and famed monkey forest with its cheeky inhabitants.

A foggy morning in Denpasar, Bali.

Benoa (Denpasar), Bali, Indonesia

Featured shore excursions, recommended for you.

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Indonesia cruise

Indonesia: Coastal Cruises with Aqua Expeditions

With vast seas studded with islands of unique character, indonesia is the perfect setting for a small ship cruising expedition..

best indonesian cruises

Straddling three time zones and two mighty oceans, the country of Indonesia is the largest archipelagic country in the world. With open sea making up three-quarters of the country’s area, and 18,000 tropical islands stretching over 3,100 miles (5,000 km) longitudinally from East to West and 1,050 miles (1,700 km) latitudinally from North to South, Indonesia is a prime location in Southeast Asia for cruise adventures.

With its immense size, Indonesia also boasts astounding cultural diversity, with 1,300 ethnic groups and 652 documented languages, of which 11 have disappeared and 19 on the verge of becoming extinct. Year-round, a vast number of festivals are celebrated across the country, from ancient war rituals to folkloric traditions unique to each region or community.

Beyond the Southeast Asian country’s characteristic volcanic landscapes and colorful endemic wildlife, a cultural treasure trove of age-old traditions and well-preserved colonial-era relics await your discovery. Set sail through Indonesia on Aqua Blu, a luxurious vessel that enables you to enjoy the most rewarding coastal cruise itineraries in the world.

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Discover our Itineraries

Here’s a look at some of the finest Indonesia small ship cruises to sail during your visit.

Located in the Coral Triangle between the major landmasses of Sumbawa to the west and Flores to the east, the waters of Komodo National Park are embraced by fast flowing currents from the Indian Ocean and warm tropical Indonesia seas enriched with volcanic nutrients. The result is a vibrant marine environment home to more than 1,000 species of marine life, including the manta ray, sea turtles and whale sharks, as well as over 260 species of corals. From shore to shore, the sheer diversity of sea life and different underwater environments make this region endlessly rewarding for both divers and non-divers alike.

best indonesian cruises

Komodo National Park spans across three major islands including Rinca, Padar, and the namesake Komodo Island. Along with this, there are numerous remote islands with a total surface area (marina and land) of 1817 square kilometers. The park provides refuge to thousands of marine and terrestrial species including whales, sharks, manta rays, and komodo dragons.

Complemented by a dry and sunny savannah-like tropical climate, Komodo National Park’s variety of land and sea experiences makes cruising an ideal way to discover the region. Built to set a new standard for luxury cruise ships, the speed, stability, and long-range capabilities of the Aqua’s small ship expedition guarantees five-star comfort, utmost exclusivity and an unrivaled immersion into the Park’s natural wonders. Access otherwise hard-to-reach marine sites and trekking routes where nature and wildlife flourish, often without other boats or humans in sight.

best indonesian cruises

Known for its larger-than-life views and green-capped hills, Padar Island is one of the most picturesque places in Komodo National Park. The island brings together a unique landscape of crescent-shaped beaches with black and white sands.

best indonesian cruises

Rinca Island is home to the famous Komodo dragons, the largest lizards in the world which are indigenous to this Indonesia archipelago. Rinca is also an ideal spot to snorkel alongside tropical fish and rays.

best indonesian cruises

An official UNESCO World Heritage Site, a visit to Komodo Island is a quintessential part of an Indonesia cruise. The island features the volcanic hills and savannah, and is surrounded by clear turquoise waters. There are thousands of species of fish which live here, and visitors can spend hours snorkeling to find new sights.

Known for their volcanoes and palm-lined beaches, the Banda Islands are a group of islands in the north-east of Indonesia, commonly referred to as the Spice Islands. The islands have a rich colonial history, the remnants of which make them an exceptionally interesting destination to visit. For European settlers, the Spice Islands were appealing thanks to the presence of nutmeg, a spice that was worth more than its weight in gold.

The Spice Islands were the holy grail for famous old world explorers including Christopher Columbus and Ferdinand Magellan, who sought but never managed to find them. Eventually, the Spice Islands were discovered and the Dutch established and exercised control over them — with a monopoly on the nutmeg trade — from 1607 up until the late 18th century. In that time, the Dutch built up numerous colonial-styled architecture and extensive fortifications. Surrounded by the local town and the oldest nutmeg plantations on Earth, these structures remain mostly well-preserved.

best indonesian cruises

The Spice Islands consist of a cluster of seven major islands, including the populated Banda Neira, Banda Besar and Pulau Run. Such was the significance of a monopoly of the Spice Islands, the Dutch East India Company, also known as the VOC, had traded Manhattan (in today’s New York City) for Pulau Run (an island just over a square mile in area) with the British in 1667.

best indonesian cruises

Known for its colonial relics, Banda Neira hosts iconic forts dating back to the 17th century. Among the most awe-inspiring is Fort Belgica, which features medieval towers at each vertex. Climbing up the towers is a rewarding experience, offering stunning views of the surrounding sea, Banda Neira town, and the Gunung Banda Api volcano.

best indonesian cruises

The name ‘Raja Ampat’ translates to ‘Four Kings’ in English. It is derived from local mythology which tells a story of a woman finding seven eggs, four of which hatched into boys. They grew up to become the kings of Raja Ampat’s four biggest islands: Salawate, Batanta, Misool, and Waigeo.

Raja Ampat captivates with the enigmatic beauty of its limestone karst island clusters bewilders explorers with dramatic landscapes that shelter secret lagoons, bays and beaches. In between excursions visiting the world’s most biodiverse environments, Raja Ampat offers the chance to find that one perfect private hideaway out of thousands. To put it simply, every day is a National Geographic moment right before your eyes.

best indonesian cruises

At almost every turn, the mesmerizing turquoise and blue hues of Raja Ampat’s waters constantly jostle for your attention and beckon you to swim and dive into the depths. Located at the heart of the Coral Triangle, the region is known to house every kind of underwater habitat imaginable; pristine reef flats, secret bays, swift channels, deep drop-offs, shallow seamounts, mangroves, marine lakes, and protected coral gardens are just a sample of the types of marine habitats that can be found in the roughly 20,000 square mile region.

Raja Ampat also happens to be in the middle of a major cetacean migration route and aggregation site where various whales and dolphin species have been sighted. This region is also the meeting point of the Indian and the Pacific Ocean, where a six-inch (15cm) average height difference between these two oceans creates an immense exchange of water carrying millions of aquatic eggs and larvae that spawn to life or serve as a vital source of food for marine animals.

best indonesian cruises

At the same time, the cooler water from deep-sea trenches and basins has also played a part in Raja Ampat’s stunning biodiversity. These environments offered wildlife shelter from glacial water in the ice ages, and today offers natural protection against rising sea temperatures that have resulted in the bleaching of other relatively unprotected coral habitats including the Great Barrier Reef and the Maldives. Endowed with natural geological defenses, Raja Ampat is truly Mother Nature’s last frontier.

Apart from its regular itineraries, Aqua Blu also offers highly exclusive cross-destination Indonesia cruises four times a year. Each of these sailings lasts 12 nights, exploring multiple destinations across East Indonesia in a single expedition. This is the perfect opportunity for those looking to discover the hidden gems of this region, which not many get a chance to see.

Every March, Aqua Blu sails from Raja Ampat to the Spice Islands – bringing together both itineraries for one unforgettable experience. This sailing combines the diving and marine-life-centric experiences – which Raja Ampat is best known for – with the rich local culture and heritage that can be found in the Spice Islands.

Immediately after, the expedition ship charts course for Flores for its next 12-night itinerary, combining another set of adventures in the Spice Islands with visits to remote and rarely visited places such as Alor, Damar, and Romang. After a season of sailing in Bali & Komodo National Park, Aqua Blu repeats this itinerary in reverse – sailing back to the Spice Islands at the end of September.

The final of the 12-night itineraries involves a trip from Spice Island to Raja Ampat every December.

best indonesian cruises

Asmat and West Papua are among the most uncharted destinations in all of Indonesia, rarely visited on board New Guinea cruises. Aqua Expeditions’ exclusive sailings in November 2025 will explore this region with stops at destinations including Momon, Cape Papisol, Triton Bay, and the jungles of Asmat.

Nestled along the western coast of New Guinea, the Asmat region is a land of mystique and wonder. It is home to one of Indonesia’s most enigmatic indigenous communities, the Asmat tribe. For centuries, this tribe has preserved its ancient traditions, with a strong focus on ancestor worship and rituals to maintain the balance of the natural world.

As guests embark on this extraordinary voyage aboard Aqua Blu, they will have the privilege of exploring the secrets of Asmat firsthand. Our itinerary includes visits to local villages steeped in rich heritage and culture, offering a rare opportunity to connect with the Asmat people and gain insights into their way of life.

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Momon’s spectacular Kiti-Kiti waterfall is a jewel waiting to be discovered in the Nusalasi Bay Coastal Park Conservation Area of West Papua. The waterfall stems from a large river that originates in the highlands of the Papuan jungle. As it moves downstream, the river becomes a breathtaking natural waterfall that plunges a torrent of aqua blue directly into the ocean from the soaring emerald mountains above.

  Over on Cape Papisol, guests can embark on a stunning up-river hike, starting from the island’s magnificent white-sand beaches and winding through lush, verdant forest for a stunning panoramic view of the Bomberai Peninsula, also known as the Bird’s Beak Peninsula for its distinct avian shape. This ecologically rich area is home to over 300 bird species, tree kangaroos, birds of paradise, and the endangered leatherback turtle, which nests on the pristine beaches.

  Finally, Triton Bay offers a once-in-a-lifetime opportunity to swim alongside whale sharks. These gentle giants of the sea are attracted to the schools of bait fish that are caught underneath bagans – traditional Indonesian fishing platforms. Local fisherman have developed a fascinating, symbiotic relationship with these curious marine animals – known for their friendly behavior. This region also features sublime, uncrowded dive sites, home to a wealth of rare, endemic marine life and reefs decorated with flourishing soft coral that are considered the best in the world.

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Indonesia Luxury Cruises – How? Where? Who?

By Author Katie

Posted on Last updated: September 14, 2023

Indonesia Luxury Cruises – How? Where? Who?

There are many Indonesia Luxury Cruises for you to choose from when planning a trip to Asia. We share some of the best options as well as the best Indonesian cruise destinations.

Envision a vast archipelago, where unparalleled beauty intertwines with cultural riches, becoming the ultimate dream destination. Indonesia, with its multifaceted allure, beckons travelers to embark on a journey of exploration. Indonesia is one of the most romantic destinations for a luxury getaway .

But beyond the traditional means of traversing this diverse nation, luxury cruises emerge as the epitome of enchantment, offering an immersive encounter with Indonesia’s treasures.

Through a fusion of lavish comfort and uncharted exploration, Indonesia luxury cruises have transcended into a coveted experience, where the country’s landscapes come alive, and its vibrant culture is embraced in the lap of opulence.

Why take an Indonesia luxury cruise?

Indonesia cruise near an island

Luxury cruises in Indonesia offer adventurers an unparalleled gateway to explore this vast, multifaceted nation. These cruises open doors to remote and pristine locales, often beyond the reach of terrestrial travelers.

They harmonize the luxuries of opulent travel with the adrenaline-pumping thrill of uncharted experiences, making them the quintessential choice for the discerning voyager.

The Allure of Indonesia’s Natural Wonders

Bali’s iconic rice terraces and Komodo Island’s pristine beaches merely scratch the surface of Indonesia’s natural splendor. These luxury cruises extend an invitation to traverse this vast canvas of beauty while ensconced in the embrace of sophisticated vessels.

Imagine the serenade of gentle waves at dawn, as the ship sails amidst the turquoise waters of Raja Ampat. Or picture the sun casting its golden glow upon the ancient Borobudur Temple, a spectacle unveiled as your cruise elegantly navigates the Java Sea.

These voyages forge an intimate connection with Indonesia’s diverse ecosystems, often concealed from the mainstream traveler.

Best Indonesia luxury cruise destinations

Raja Ampat from above

Revered as the “Crown Jewel” of Indonesia’s marine biodiversity, Raja Ampat is a mandatory pilgrimage for connoisseurs of luxury cruising.

Nestled in West Papua, this remote archipelago cradles some of the most intricate and bountiful marine ecosystems on Earth.

Cruisers can plunge into kaleidoscopic coral reefs, cross paths with elusive species of fish, and even share the oceanic realm with the majestic manta rays.

This is a popular soul-searching destination for those looking to find themselves again.

Komodo Islands in Indonesia

Komodo Island

The legendary domain of the Komodo dragons, Komodo Island unfurls its mystical allure for luxury cruise enthusiasts.

Beyond the colossal lizards, the island unveils vistas of ethereal beauty, showcasing world-class diving spots and inviting avenues for treks and hikes.

Bali rice fields in Indonesia

Bali, often celebrated for its vibrant culture and bustling tourist epicenters, reveals a distinct facet when seen from the luxurious deck of a cruise.

Here, voyagers can savor the tranquility of secluded beaches, wander through traditional villages, and be enchanted by the mesmerizing tapestry of sunsets over the Indian Ocean.

Bali is one of the cheapest places in the world , so spend time exploring the island at your own leisure if you can. We recommend spending at least 7 days in Bali .

Java landscape in Indonesia

Java, the heart of Indonesia’s cultural heritage, proudly features ancient temples like Borobudur and Prambanan. Luxury cruises tracing Java’s north coast entwine history, culture, and scenic vistas into a captivating odyssey.

Flores village in Indonesia

Nestled in eastern Indonesia, Flores remains a concealed gem, awaiting discovery. Luxury cruises unfurl the island’s rugged coastlines, unveil stunning waterfalls, and lead adventurers to the enigmatic Kelimutu volcano, adorned with its three mystic lakes.

Best Luxury Cruise Operators in Indonesia

Numerous luxury cruise operators have embraced the art of crafting unforgettable Indonesian voyages. They curate an array of vessels, each with its unique character and itineraries tailored to diverse preferences. Among these esteemed artisans of Indonesian exploration are:

Aqua Expeditions Indonesia Luxury Cruise

Aqua Expeditions

Renowned for its impeccable service and sumptuous vessels, Aqua Expeditions regales travelers with cruises in Raja Ampat and Komodo Island.

Expect palatial cabins, gourmet culinary experiences, and expert-guided excursions that bring Indonesia’s wonders to life.

Alila Purnama Indonesia Luxury Cruise

Alila Purnama

The opulent phinisi-style yacht, Alila Purnama, offers exclusive cruises in Raja Ampat and Komodo. This maritime masterpiece is dedicated to curating personalized encounters, including immersive dives, island escapades, and indulgent fine dining.

Pandaw Luxury Cruises

Pandaw Cruises

Pandaw Cruises elegantly navigates the Indonesian archipelago with traditional river cruisers. These vessels promise an authentic and intimate sojourn, revealing hidden facets of Indonesia, especially in regions like Kalimantan (Borneo) and West Papua.

Seatrek Sailing Adventures Indonesia Luxury Cruises

Seatrek Sailing Adventures

Seatrek beckons travelers to explore Indonesia’s multifaceted regions via a fleet of luxury sailing cruises. Their voyages unlock the doors to cultural landmarks, pristine snorkeling havens, and the serene comfort of traditional wooden schooners.

Silolona Sojourns

Silolona orchestrates bespoke luxury charters, intertwining adventure and cultural immersion in remote destinations. Their vessels, crafted in the traditional phinisi schooner style, transport guests to unparalleled luxury amidst untouched panoramas.

Indonesia Cheapest travel destinations

What to expect on an Indonesia Cruise?

Luxury cruises in Indonesia transcend the mere pursuit of destinations; they sculpt an intricate mosaic of onboard experiences. Here, perplexity and burstiness converge to craft a symphony for the senses, promising:

Opulent Cabins: Cabins, spacious and lavishly adorned, usher travelers into a world of serenity, offering panoramic ocean vistas.

Gourmet Gastronomy : World-class chefs orchestrate gastronomic symphonies, celebrating Indonesia’s fresh, locally sourced ingredients.

Savvy Guides: Erudite guides accompany exploratory sojourns, weaving tales of culture, history, and the natural wonders of Indonesia.

Aqueous Adventures: A spectrum of water-based activities beckons, including snorkeling, diving, kayaking, and paddleboarding.

Spa Sanctuaries: For moments of rest and rejuvenation, select cruises feature onboard spas and wellness centers, where indulgence knows no bounds.

Cultural Revelations: Opportunities abound to connect with local communities, partake in age-old ceremonies, and immerse oneself in the rich tapestry of indigenous customs.

Sunset Serenades: The crowning jewel of many luxury cruises lies in the spectacular sunsets that paint the open sea in a palette of mesmerizing hues.

Sustainability and Stewardship: A prevailing theme among luxury cruise operators in Indonesia is the earnest commitment to sustainable and responsible tourism.

Collaborations with local communities and conservation organizations stand as a testament to the dedication to preserving the fragile ecosystems and cultural tapestries of the regions they traverse.

Unparalleled Comfort : Distinctive, defining, and effortlessly opulent, Indonesian luxury cruises redefine comfort. The opulence of well-appointed cabins, the symphony of world-class dining, and the crescendo of top-tier amenities create an orchestration of luxury that resonates with every guest.

Immerse yourself in Indonesia’s Culture: Indonesia’s tapestry of cultures, languages, and traditions invites travelers to step beyond the ordinary.

Venture to Papua, where indigenous tribes share their stories or partake in traditional batik workshops in Yogyakarta, where the threads of heritage are woven into every design.

Sustainable Sojourns and Community Care : In a world increasingly aware of its environmental footprint, luxury cruises in Indonesia take center stage in responsible tourism.

The ethos of these voyages emphasizes eco-conscious practices—minimizing waste, championing marine conservation, and fostering sustainable fishing.

Collaborations with local communities are more than just alliances; they are pledges to elevate economic growth and preserve cultural legacies.

As the sun dips below the horizon, setting the tranquil waters of Bali aglow, or when the last rays of daylight caress the soaring temples of Prambanan, the voyage aboard Indonesia luxury cruises is more than a mere vacation.

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Looking for the best Indonesia Cruises For Solo Travelers? Choose from the finest cruises available in Indonesia, hand-picked by our destination specialists. Operated by only the most trusted of partners, these cruises have been carefully selected for their authentic design, customer service excellence, and extraordinary itineraries.

Ombak Putih at sea

Ombak Putih

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Jelajahi Laut

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